rRF:
rRF ID: 28S-001-47-67
rRNA gene: 28S-001, Start-End: 47-67
Sequence: AGTCAGCGGAGGAGAAGAAAC
Motif group: 28S, Start-End: 47-68 (Click to see all isoforms in the group)
Other mappings of the rRF:
rRNA gene: 45S-001, Start-End: 7971-7991,
rRNA gene: 28S, Start-End: 47-67,
rRNA gene: 45S, Start-End: 7981-8001,
Motif (red letters in the sequence above):
Comments:
Selected criteria:
Target gene 1:
Gene name: RPL41
Transcript id: ENST05220223641.1
Region: 3utr
Total unique hybrids: 14
Number of reads supporting unique hybrids: 576
Hybrids:
MFE: -25
AGT AAGAAAC
CAGCGGAGGAG
|||||||||||
GTCGCCTTCTC
TTAAGAAGTCGATTTT CA
Number of reads supporting this unique hybrid: 125
Click to see raw chimeric reads
Target gene 2:
Gene name: JADE1
Transcript id: ENST05220221565.1
Region: 5utr
Total unique hybrids: 2
Number of reads supporting unique hybrids: 64
Hybrids:
MFE: -17.7
AGTCA AGAAGAAAC
GCGGAGG
|||||||
CGCCTTC
AATTTGCGGG AACTC
Number of reads supporting this unique hybrid: 16
Click to see raw chimeric reads
Target gene 3:
Gene name: FZR1
Transcript id: ENST05220006544.1
Region: intron
Total unique hybrids: 1
Number of reads supporting unique hybrids: 40
Hybrids:
MFE: -25.1
A AGAAGAAAC
GTCAGCGGAGG
|||||||||||
TAGTCGTCTCC
GACTTCCCG C
Number of reads supporting this unique hybrid: 10
Click to see raw chimeric reads
Target gene 4:
Gene name: TNXB
Transcript id: ENST05220049424.1
Region: 5utr
Total unique hybrids: 1
Number of reads supporting unique hybrids: 32
Hybrids:
MFE: -17.8
AGTCAGC AAGAAAC
GGAGGAG
|||||||
CCTCCTC
AGACGTCGCTCGTCC
Number of reads supporting this unique hybrid: 8
Click to see raw chimeric reads
Target gene 5:
Gene name: ZMIZ1
Transcript id: ENST05220127677.1
Region: intron
Total unique hybrids: 1
Number of reads supporting unique hybrids: 32
Hybrids:
MFE: -21.6
AGTCA AAGAAAC
GCGGAGGAG
|||||||||
CGTCTCCTC
CC CTCACCTTCTCTCTCC
Number of reads supporting this unique hybrid: 8
Click to see raw chimeric reads
Target gene 6:
Gene name: USP6NL
Transcript id: ENST05220122099.1
Region: 3utr
Total unique hybrids: 1
Number of reads supporting unique hybrids: 28
Hybrids:
MFE: -19.1
AGTCAGC GAAAC
GGAGGAGAA
|||||||||
CTTCCTCTT
CCGTTGTCGA ACTA
Number of reads supporting this unique hybrid: 7
Click to see raw chimeric reads
Target gene 7:
Gene name: NGDN
Transcript id: ENST05220113122.1
Region: cds
Total unique hybrids: 1
Number of reads supporting unique hybrids: 28
Hybrids:
MFE: -17.1
AGTCAGC AAGAAAC
GGAGGAG
|||||||
CCTCCTT
ATGACCTTGGTTCGCA GTA
Number of reads supporting this unique hybrid: 7
Click to see raw chimeric reads
Target gene 8:
Gene name: CSTB
Transcript id: ENST05220024565.1
Region: 3utr
Total unique hybrids: 1
Number of reads supporting unique hybrids: 24
Hybrids:
MFE: -17.9
AGTC GAGAAGAAAC
AGCGGAG
|||||||
TCGCCTC
GACCCTTCTC ACTC
Number of reads supporting this unique hybrid: 6
Click to see raw chimeric reads
Target gene 9:
Gene name: COPS7A
Transcript id: ENST05220144095.1
Region: 3utr
Total unique hybrids: 1
Number of reads supporting unique hybrids: 24
Hybrids:
MFE: -15.2
AGT AGGAGAAGAAAC
CAGCGG
||||||
GTCGCC
TCTCTCGTACC CCTCGTTA
Number of reads supporting this unique hybrid: 6
Click to see raw chimeric reads
Target gene 10:
Gene name: GRID2
Transcript id: ENST05220149913.1
Region: intron
Total unique hybrids: 1
Number of reads supporting unique hybrids: 24
Hybrids:
MFE: -25
AGTC AGAAAC
AGCGGAGGAGA
|||||||||||
TCGTCTCCTCT
C CTGTACTAAGACACAACTCTCCT
Number of reads supporting this unique hybrid: 6
Click to see raw chimeric reads
Target gene 11:
Gene name: DCAF8
Transcript id: ENST05220057372.1
Region: 5utr
Total unique hybrids: 2
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -20
AGTCAGC AAC
GGAGGAGAAGA
|||||||||||
CTTCCTTTTCT
AGCCCAGCCGC GGACTCGCGATTCTCGAACCCTATG
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 12:
Gene name: ZMPSTE24
Transcript id: ENST05220195178.1
Region: 3utr
Total unique hybrids: 2
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -24.1
A GAGAAGAAAC
GTCAGCGGAG
||||||||||
CAGTCGCCTC
GTTTCTGAAATACCAGTC
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 13:
Gene name: VPS13D
Transcript id: ENST05220145808.1
Region: cds
Total unique hybrids: 2
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -15.8
AG AGGAGAAGAAAC
TCAGCGG
|||||||
AGTCGCT
TCA CTCCTTGTAGTGTTAGGTACGTCAG
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 14:
Gene name: RPL23A
Transcript id: ENST05220097309.1
Region: cds
Total unique hybrids: 2
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -23.4
A AGAAGAAAC
GTCAGCGGAGG
|||||||||||
CAGTCGCCTTT
TCTGAGTCAC GAA
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 15:
Gene name: SLC22A5
Transcript id: ENST05220125600.1
Region: 3utr
Total unique hybrids: 2
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -19.7
AGAAGAAAC
AGTCAGCGGAGG
||||||||||||
TTAGTCGTTTCT
CTTCTGTTAATGTGACTTGTGTTTTA
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 16:
Gene name: TIMP3
Transcript id: ENST05220064757.1
Region: 5utr
Total unique hybrids: 5
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -18.9
AGTCAGC AAGAAAC
GGAGGAG
|||||||
CCTCCTC
GA GTTCTCCTCCTC
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 17:
Gene name: TMEM68
Transcript id: ENST05220072299.1
Region: 5utr
Total unique hybrids: 1
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -20.7
AGTC AGAAGAAAC
AGCGGAGG
||||||||
TCGCCTCC
TCGGT GACG
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads
Target gene 18:
Gene name: MIGA2
Transcript id: ENST05220048881.1
Region: cds
Total unique hybrids: 1
Number of reads supporting unique hybrids: 20
Hybrids:
MFE: -26.3
AGTCA AAAC
GCGGAGGAGAAG
||||||||||||
CGCCTCTTCTTC
CCTGAGTTTCTCGAGCCAC CTTAG
Number of reads supporting this unique hybrid: 5
Click to see raw chimeric reads